References

Dr. Lichtarge Lab ET website(publication list)

Lichtarge, O., H.R. Bourne and F.E. Cohen (1996).
"An evolutionary trace method defines binding surfaces common to protein families."
J Mol Biol 257(2): 342-58.

Lichtarge, O., K.R. Yamamoto and F.E. Cohen (1997).
"Identification of functional surfaces of the zinc binding domains of intracellular receptors."
J Mol Biol 274(3): 325-37.

Sowa, M.E., W. He, K.C. Slep, M.A. Kercher, O. Lichtarge and T.G. Wensel (2001).
"Prediction and confirmation of a site critical for effector regulation of RGS domain activity."
Nat Struct Biol 8(3): 234-7.

Madabushi, S., H. Yao, M. Marsh, D.M. Kristensen, A. Philippi, M.E. Sowa and O. Lichtarge (2002).
"Structural clusters of evolutionary trace residues are statistically significant and common in proteins."
J Mol Biol 316(1): 139-54.

Lichtarge, O. and M.E. Sowa (2002).
"Evolutionary predictions of binding surfaces and interactions."
Curr Opin Struct Biol 12(1): 21-7.

Yao, H., D.M. Kristensen, I. Mihalek, M.E. Sowa, C. Shaw, M. Kimmel, L. Kavraki and O. Lichtarge (2003).
"An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures."
J Mol Biol. 326: 255-261.

Mihalek, I., I. Res, O. Lichtarge. (2004).
"A Family of Evolution-Entropy Hybrid Methods for Ranking of Protein Residues by Importance"
J. Mol. Bio. 336(5): 1265-82.

Gu, P., D.H. Morgan, M. Sattar, X. Xu, R. Wagner, M. Ravisconi, O.Lichtarge, and A.J. Cooney.
"Evolutionary trace-based peptides identify a novel asymmetric interaction that mediates oligomerization in nuclear receptors."
J. Biol. Chem. 280(36):31818-29.

Raviscioni, M., P. Gu, M. Sattar, A.J. Cooney, O. Lichtarge. (2005).
"Correlated evolutionary pressure at interacting transcription factors and DNA response elements can guide the rational engineering of DNA binding specificity."
J. Mol. Bio. 350(3) : 402-15.

Morgan, D.H., D.M. Kristensen, D. Mittleman, and O. Lichtarge.
"ET Viewer: An Application for Predicting and Visualizing Functional Sites in Protein Structures."
Bioinformatics. 2006 Aug 15;22(16):2049-50. Epub 2006 Jun 29.